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課程名稱 |
生物資訊學導論
INTRODUCTION OF BIOINFORMATICS |
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開課學期 |
98-2 |
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授課對象 |
學程 生物統計學程 |
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授課教師 |
林恩仲 |
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課號 |
AniSci4002 |
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課程識別碼 |
606 36800 |
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班次 |
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學分 |
2 |
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全/半年 |
半年 |
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必/選修 |
選修 |
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上課時間 |
星期五3,4(10:20~12:10) |
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上課地點 |
加工204室 |
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備註 |
動物科學學群必修
總人數上限：30人 |
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Ceiba 課程網頁 |
http://ceiba.ntu.edu.tw/982intro_bioinfo |
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課程簡介影片 |
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核心能力關聯 |
核心能力與課程規劃關聯圖 |
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課程大綱
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課程概述 |
This course is designed to introduce students into the world of Bioinformatics in genomics and functional genomics. |
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課程目標 |
How bioinformatics works for gene and genomic research will be briefly introduced to the undergraduate students who have taken courses of genetics and molecular genetics/biology (or courses equivalent to). Besides the exams of mid-term and final, we will have a final project for each student to practically apply the skills taught in the classes. All the exams and project will be counted in the final score along with the in-class performance of each student. |
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課程要求 |
genetics and molecular genetics/biology (or courses equivalent to) |
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預期每週課後學習時數 |
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Office Hours |
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指定閱讀 |
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參考書目 |
1.Baxevanis, A. D. and Ouellette, B. F. F. (ed.) 2005. Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins. 3rd Ed. Published by: John Wiley & Son, Inc., Hoboken, NJ, U.S.A.
2.Gibson, G and S. V. Muse. 2009. A Primer of Genome Sciences. 3rd edition. Published by: Sinauer Associates, Sunderland, MA, USA. |
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評量方式
(僅供參考) |
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No. |
項目 |
百分比 |
說明 |
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1. |
平常成績 |
15% |
出席、作業、提問等 |
2. |
期末報告 |
25% |
report of final project |
3. |
期中考 |
25% |
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4. |
期末考 |
35% |
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週次 |
日期 |
單元主題 |
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第1週 |
2/26 |
History and definition of bioinformatics |
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第2週 |
3/05 |
Pairwise sequence alignment |
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第3週 |
3/12 |
Multiple sequence alignment |
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第4週 |
3/19 |
BLAST against sequence databases |
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第5週 |
3/26 |
Alignment of protein sequence |
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第6週 |
4/02 |
Cluster analysis for cDNA sequences |
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第7週 |
4/09 |
Gene prediction |
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第8週 |
4/16 |
Quality control of DNA sequencing |
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第9週 |
4/23 |
Midterm |
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第10週 |
4/30 |
Introduction to Public Databases (I) |
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第11週 |
5/07 |
Introduction to Public Databases (II) |
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第12週 |
5/14 |
Introduction to Public Databases (III) |
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第13週 |
5/21 |
Introduction to Public Databases (IV) |
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第14週 |
5/28 |
Pathway, interaction and function |
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第15週 |
6/04 |
Phylogenetic analysis (I) |
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第16週 |
6/11 |
Phylogenetic analysis (II) |
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第17週 |
6/18 |
Discussion and review
(Turn-in of final report) |
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第18週 |
6/25 |
Final exam |
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